Influenza Virus RNA Detection and A Subtyping (FLUPCR)  

 
NPHL has moved to an electronic ordering system, NUlirt, and it is now the preferred method to order all tests. Once ordered, print a "batch list" (see NUlirt Guide).

Forms Required - NUlirt batch list of NPHL Test Request Form (completed in its entirety) must accompany the specimen to include the following information: symptoms and date of onset, pregnancy status, travel and vaccine history. Testing will not be performed without all required information.

Please call NPHL Client Services at 402-559-2440 or toll free at 800-334-0459 for further clarification.

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Test: Influenza Virus RNA Detection and A Subtyping
  • Pre-approval needed from state or local health department
  • Send documented approval to NPHL@unmc.edu or call 402-559-9444
  • NUlirt Order: FLUPCR
 
Synonym: Flu PCR or RT-PCR, Influenza Confirmation, FLUPCR, Influenza subtyping  
Method: Qualitative nucleic acid amplified real time RT-PCR assay  
Availability:
  • Test performed Monday - Friday
  • Turnaround time 1-7 days
 
Specimen:
  • Upper Respiratory Tract:
    • posterior-pharyngeal swab
    • nasopharyngeal or nasal swab
    • nasal aspirate, or nasal wash
  • Lower Respiratory Tract:
    • tracheal aspirate
    • bronchoalveolar lavage (BAL)
    • bronchial washes
    • endotracheal aspirate
    • endotracheal wash
    • sputum

   
Collection Device:
  • Human respiratory specimens in Viral Transport Media (VTM)
  • Test subject to CLIA regulations and requires 2 patient identifiers on specimen container and requisition forms
 
Volume:
  • 2-3 mL from washes, aspirates, BAL, or swabs
  • 500 uL from sputum
 
Storage/Transport:
  • See Category B shipping instructions
  • Specimen Packaging & Shipping - NPHL
  • Seal tubes with Parafilm™ or tape and place in biohazard bag with absorbent material
  • NUlirt packing list or appropriate paperwork (completed in its entirety) must accompany specimens
 
Unacceptable:
  • Slides
  • Smears
  • Incorrect sources
  • Samples collected in non-viral transport media or using a bacterial culture swab
  • Dry swabs 
  • Wood shaft or calcium alginate swabs
  • Samples collected in EIA or extracted transport media.
 
Specimen Stability:
  • Stable at 2-8° C up to 72 hours
  • Frozen at -20° C up to 1 month
 
Comments:
  • False negative result may occur if a specimen is improperly collected, transported, or handled
  • False negative results may occur if amplification inhibitors are present in the specimen
  • False negative results may occur due to inadequate viral load
 
Revised: 10/23/2025 
If you have questions about proper specimen collection, please call NPHL Client Services at 402-559-2440 or toll free at 800-334-0459.

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